What routing are you intending to take with boost ?
shortest would be to rotate compressor, blow downwards ( if possible ) and 90deg into intercooler. Or possibly try and route over the top, doing a u-turn then into the intercooler.
Then swap intake plenum so inlet is on drivers side and blow boost into it that way
Or you could blow from blower across to driver side and into the IC.
Then blow back out under the blower and up into throttle as it sits now.
Something like this

Lots of photos here
http://www.yellowbullet.com/forum/showt ... p?t=116249